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CO-IMMUNOPRECIPITATIONANALYSISOFPROTEIN-PROTEININTERACTIONS

Thisprotocolusestotalcellextractstoanalyzeputativeprotein-proteininteractionsineukaryoticcells.Onecanalsousenuclearextractsasasourceforthisprotocol.

  1. Transfect2-T150sofHEK293cellswiththeappropriateexpressionvectors(proteinAandproteinB)asperstandardprotocol.Alternatively,youcanuseanendogenouscelllinethatexpressedbothproteinsifyouhavespecificantibodiesforeachprotein.
  2. After48hours,harvestcellsandwashwithPBS-/-
  3. Transfercellsinto2microfugetubesandlyseeachtubeofcellswith1mlof:

    20mMTrispH7.5

    100mMNaCl

    0.5%NP-40

    0.5mMEDTA

    0.5mMPMSF

    0.5%proteaseinhibitorcocktail(Sigma)

    pipetcellsupanddownextensivelyandthensitonicefor10minutes.

  4. Spindowncellextractsatmaxspeedfor10minutesat40C.
  5. Poolextractsfromeachtransfectionintoa15mltube.Forimmunoprecipitation,add10ml(polyclonalserum)or10mgs(monoclonalantibody)to1mlofextract.Incubatewithend-over-endmixingfor2hoursat40C.Save50mlofeachcellextractandadd50mlof2XSDS-PAGEsamplebufferandboilfor5min.
  6. Wash50mlofProteinA/GSepharose(SantaCruzBiotech)with1mloflysisbuffer---3timesandthenremovelastofexcessbuffercarefully.
  7. Afterthe2hourincubation(Step5),addthewashedProteinA/GSepharosetotheimmunoprecipiatesandmixend-over-endfor1hourat40C.
  8. Washimmunoprecipitates3Xwith1mloflysisbufferandremovelastofbuffercarefully.Add50mlof2XSDS-PAGEsamplebufferandboil5min.LoadonSDS-PAGEgelasfollows:

    Lane1PAGEstandards

    Lane2proteinAtransfectedcells

    Lane3proteinBtransfectedcells

    Lane4proteinA/Btransfectedcells

    Alsorunagelwithjusttheextract(Step5)beforeimmunoprecipitationtoshowthateachcelllineexpressestherightprotein.

  9. WesternblotgettoImmobilonmembranes(Millipore)andblockinthefollowingbufferovernight:

    Blotto

    50mMTrispH7.5

    100mMNaCl

    0.1%Tween20

    5%drymilk

  10. ProbethenextdaywiththeappropriateantibodycombinationanddevelopusingtheECLkit(seeWesternblotprotocol)

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