
The fundamental structure of cell membranes is bilayers composed of phospholipids, and the vital function of the phospholipids in the membrane is to help keep it fluid and semi-permeable. Conventional glycerophospholipids have acyl chains attached to the sn-1 and sn-2 positions of the glycerol backbone via an ester bond. Ether lipids are a unique class of glycerophospholipids that have an alkyl chain attached to the sn-1 position by an ether bond (glycerol-ether lipids). In ether lipids, the alcohol group attached to the phosphate is generally choline or ethanolamine. Ether-linked phospholipids such as 1-alkyl-2-acyl-phosphatidylcholine and dialkylphosphatidylcholine are also found in the plasma and organelle membranes of mammalian species. Ether lipids form approximately 20% of the total phospholipid in mammals with different tissue distribution; brain, heart, spleen and white blood cells have the highest levels, while liver have a very little amount of ether lipids.
Studies on the formation and thermodynamic properties of ether-linked phospholipid bilayer membranes have indicated that in contrast to ester-linked phospholipid, the formation of the non-bilayer structure takes place spontaneously. This is attributed to the weaker interaction between polar headgroups in the ether-linked than that in the ester-linked phospholipids. It has also shown that the phase behavior of the ether-linked phospholipid bilayer membranes in ambient pressure is almost equivalent to that of the ester-linked phospholipid bilayer membranes under high temperatures and pressures, and the difference in the phase behavior decrease as the alkyl-chain length increases.
Due to distinctive properties of ether lipids, liposomes made from ether lipids exhibit very unique characteristics and performance: a) the ether bonds are more stable than ester linkages over a wide range of acidic or alkaline pH; b) stability properties of the liposomes is enhanced by bipolar lipids, and the saturated alkyl chains gives stability towards degradation in oxidative conditions; c) the unusual stereochemistry of the glycerol backbone enhance the resistance against the attacks by other organism phospholipases.
Phospholipase A2 (PLA2) cannot hydrolyze the ether lipid liposomes. Diether lipids do not go through hydrolysis due to having an ether bond instead of an acyl bond and therefore to do that, they are a suitable candidate for experiments that needs to be performed at a higher temperature for an extended period of time. For more information about hydrolysis and oxidation of phospholipids see here.


Saturated diether lipids can neither be hydrolyzed nor oxidized.

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一、cDNA第二链的合成:
1. 第一链反应完成后,取2ul一链产物-20℃冰箱中保存,待电泳检测。其余的产物合并,混匀,然后顺序加入下列试剂(promega):
20ul 10×DNA Polymerase I buffer
6ul10mM dNTP(自己配制)
xuldd H2O
1ulRNase H(2U/ul)
10ul DNA Polymerase I(10U/ul)
总体系为200ul;
2. 混匀后,16℃反应2.5小时;
3. 70℃灭活10分钟;
4. 反应完成后,得到200ul cDNA第二链反应体系,将此体系置于冰上;
5.取2ul二链产物,同保存的一链产物一起电泳鉴定。同时上1kb ladder,确定双链的大小范围。
注:一链,二链的电泳图是smear,且二链稍比一链大一些。
二、双链cDNA末端补平:
1. 在第二链反应体系中,顺序加入下列试剂(promega):
6ul 10mM dNTP
2ul T4 DNA Polymerase(8.7U/ul)
2ul BSA(10mg/ml)
2. 稍微离心混匀反应物, 37℃反应至少30分钟,然后75℃灭活10分钟;
3. 加入等体积酚/氯仿/异戊醇,剧烈振荡后,常温下13000g离心5分钟;
4. 离心后,吸取上清于另一1.5ml eppendof管中,加入等体积氯仿,上下颠倒几次混匀后,常温下13000g离心5分钟;
5. 吸取上清至另一eppendof管,加入1/10V3M NaAc(PH5.2)和2.5V预冷的无水乙醇,混匀,-20℃放置过夜以沉淀双链cDNA;
6. 第二日,将昨日沉淀物在4℃,13000g离心60分钟以充分沉淀双链cDNA;
7.离心完毕,弃上清,加入1ml 70%乙醇洗涤沉淀,常温下13000g离心5分钟;
8.离心完毕,弃上清,干燥沉淀至无乙醇气味.
注:第3,第4步可以用PCR 纯化试剂盒代替。
PCR纯化试剂盒操作流程:
1.溶液PE使用前应加入适量体积95%-100%的乙醇,混匀。
2.向200ul二链补平产物中加入5倍体积的buffer PB,混匀。
3.加入spin column中,13000rpm离心1min。
4.加入0.75ml buffer PE,13000rpm离心1min。
5.13000rpm,再离心1min。
6.将spin column放入一新的离心管中,加入50ul buffer EB,静置10min。
7.13000rpm离心2min。
8.加入30ul buffer EB,静置10min。
9.13000rpm离心2min。
10.加入1/10体积3M的NaAc,2.5倍体积无水乙醇,混匀,-20℃沉淀过夜。
加尾法是采用加A酶先对mirna进行加尾,然后再用带oligodt的引物反转录,他的反转录引物是通用的,一次反转录可以获得所有miRNA的cdna,效率高。茎环法是采用特异性反转录引物序列+颈环结构作为反转录引物进行反转录的,一次反转录只能获得一种mirna的cdna,可能有几种一起反转录的,这个我不太清楚一起反转录的效果。然后茎环法的经典即ABI的探针法定量试剂盒。我用过茎环法反转录+染料法定量的,下游引物为通用引物,结果不太好,就现在用的这家的他采用的是双向引物都是特异性的,效果还可以。不知道我说的清楚不,希望能对你有帮助。
大家miRNA逆转录和qPCR的试剂盒用的是那个公司的啊,求推荐!
和RevertAid™HMinusFirstStrandcDNASynthesisKit,FirstStrandcDNASynthesisKit
大家又没有用过,这个公司的酶据说很好啊。
如果是用转录出的cDNA做那跟平时就一样了。不需要特别的试剂盒、
转录的只是插入的片断,怎么会跟模板一样大呢,一般情况下应该比模板小多了。我都是跑电泳,严格来说应该跑变性的;嫌麻烦可以非变性,快速(防止RNA降解)十分钟即可;抛出来的带会有两条,上面大的是模板,下面一条比较亮的是RNA,那么你的转录就 成功了。
PCR第一个步骤如果没记错的话应该叫“变性”, PCR的话是不需要解旋酶的,直接利用DNA的高温变性特性,在高温下,使氢键断开,DNA双链恢复为单链。 (还有解旋酶好像是解除双螺旋的结构,是一种拓扑异构酶,对于氢键的打开没有贡献吧