Use4mlpolycarbonatesnap-captubesforallsteps.Rockingoftubesshouldbeperformedatalltimes.Allstepsarecarriedoutatroomtemperatureunlessotherwisestated. Day0 1.Dissectembryosinice-coldPBS.RemoveasmuchextraembryonicmembranesaspossIBLe.Puncturetheamnionandinolderembryos(>E10)puncturetheheadwithasyringeortungstenneedle. 2.Fixin4%paraformaldehyde(PFA)inPBSat4oCovernight. 3.Washtwicefor5-10minutesinPBS. 4.Washwith50%MeOH/PBS,thentwicein100%MeOHfor5-15mineach. Embryoscanbestoredat—20oCatthispoint,foruptoafewmonths. Day1 5.IncubateembryosinfreshlypreparedMeOH:DMSO:H2O2(4:1:1)atroomtemperaturefor5-10hours. Atthispointembryoscanbetakeninto100%MeOHandstoredat—20Catthispoint. 6.Rehydratetheembryosinaseriesof50%MeOH(20min)->PBS(2x15min)->freshlypreparedice-coldPBSMT(2x15min,1x1-2hour). 7.IncubatewithprimaryantibodyinPBMSTat4oCovernight. Theantibodyincubationcanbeextendedforseveralovernightswithoutcompromisingtheexperiment. Day2 8.Washwithfreshlypreparedice-coldPBMST(2x15min,5x1hour). KeepPBMSTonice,orinfridge,butperformthewashesatroomtemperature. 9.Incubatewithsecondaryantibody(FITCcoupledforgreen,orCy5,Cy3coupledforred)inPBSMTat4oCovernight. Theantibodyincubationcanbeextendedforseveralovernightswithoutcompromisingtheexperiment. Day3 10.Washasinstep8. 11.RinseinPBT(2x10min). 12.Viewandphotographunderepifluorescenceoptics,forexamplefromBLS,Leica,orZeiss.