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Curingstrainsofendogenous2-micronplasmid

Inordertocreateacircle-zeroderivativefromaCir+strain,themethodofRoseandBroach(1990)isused.A2-micron-basedplasmid,YEp351-GAL-FLP1*,thatcarriestheLEU2selectableMarkerandalsotheFLP1geneunderthecontroloftheGALpromoteristransformedintoyeast.Leu+transformantsaregrownonmediumcontaininggalactoseasthecarbonsource.Undertheseconditions,theFLP1geneisoverexpressedandcausesover-replicationoftheendogenousandartificial2-micronplasmids,whichisdeleterioustocells.Therefore,cellsthathavelosttheplasmidshaveasignificantgrowthadvantageoverthosethatretainthem.

  1. TransformyeastwithYEp351-GAL-FLP1,andselecttransformantsonSC-leu-glu2%GAL(galactose)medium.
  2. PatchtransformantsontoSC-leu-glu2%GALmedium.
  3. Patchesthatgrowwellarecandidatesforstrainsthathavelostthe2-micronplasmid.Growculturesfromthesepatchesovernightin5mlofYPD.
  4. Platecellsfromthegrownculturesatadensityof~200coloniesperYPDplateandallowthemtogrowintocolonies.
  5. ReplicaplatetoSC-leutoidentifythoselackingYEp351-GAL-FLP1.(CellsthathavelostYEp351-GAL-FLP1shouldnotbeabletogrow).
  6. Toverifythelossofthe2-micronplasmids,preparegenomicDNAfromLeu-strains(asdescribedinSectionVII)andperformSouthernanalysis(SectionVIII)onundigestedDNAusingDNAofYEp351-GAL-FLP1asaprobe.IncludeDNAfromaCir+strainonthesamegelasapositivecontrol.

PeoplealwaysaskusforamapofYEp351-GAL-FLP1,butwedon"thaveone.Allweknowis,it"sYEp351based.Linearizeitwithsomethingandlabelthewholething.

Errors!

  • Inpreviouspublications,wehaveerroneouslydesignatedtheYEp351-GAL-FLP1plasmidaspFV17.pFV17isanintegratingplasmiddescribedinthesameRoseandBroachpaper.
  • Inpreviousversionsofthiswebpage,wesaidtheplasmidcontainedGAL-REP1.Whoops!

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