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AmplideX® PCR/CE FMR1 Reagents

AmplideX FMR1AmplideX PCR/CE FMR1 Reagents* are market-leading research tools for the detection of CGG repeats in the fragile X mental retardation (FMR1) gene. These reagents provide a PCR-only approach based on Triplet Repeat Primed PCR (TP-PCR) design to reliably amplify and detect all alleles including Full Mutations.

Features & Benefits

AmplideX PCR/CE FMR1 Reagents* have created an easy-to-use, accessible, high performance method for laboratories to reliably analyze CGG repeats and detect interrupting AGG sequences in the FMR1 gene.

Reduced ComplexityEase-of-analysis of the FMR1 gene has been simplified through:

  • Implementation of proprietary PCR solution for amplifying GC-rich regions
  • Automation of result calling using AmplideX PCR/CE FMR1 Reporter* 

Optimized WorkflowValuable operator hands-on time has been significantly reduced through:

  • Direct injection of PCR products (no PCR clean up) in to Capillary Electrophoresis platforms
  • Decreased need for Southern blot analysis (up to 50 fold)
  • End-to-end solution for FMR1 analysis including all necessary reagents and software

Quality PerformancePerforming FMR1 Analysis with Greater Sensitivity and Accuracy:

  • Detection of all allele expansions, including low abundance full mutation size mosaics with up to at least 1300 CGG repeats
  • Up to 875 fold more sensitive than Southern blot1
  • Resolution of female homozygous and heterozygous samples and indication of interrupting AGG sequences
  • Proven performance as indicated by more than 30 peer reviewed publications

*For Research Use Only. Not for use in diagnostic procedures.

Download Brochure

Product Description

Analytical Characteristics of AmplideX PCR/CE FMR1 Reagents*:

  • Detects all alleles including low abundance full mutations (Figure 1)
  • Accurately sizes any repeat up to 200 CGG repeats (Figure 2)
  • Resolves female zygosity (Figure 3)
  • Detects presence of AGG interruptions (Figure 4)

Figure 1: Amplification of Asuragen’s Methylation and Sensitivity Control which has a 5% full mutation in a background of 95% Normal

AmplideX Methylation and Sensitivity Control

Figure 2. Female premutation sample with accurate sizing of Normal (30 CGG) and Pre mutation allele (56 CGG)

AmplideX Female premutation sample

Figure 3: The difference in the “stutter” peak patterns of homozygous and heterozygous female provides a clear resolution of zygosity

AmplideX resolves female zygosity

Figure 4. Female Full Mutation sample with AGG interruptions as indicated by sudden decrease in peak heights of the “stutter” peak profile

AmplideX Female Full Mutation sample

Ordering

Product NameNumber of ReactionsCatalog Number
AmplideX PCR/CE FMR1 Control24 UL49513
AmplideX mPCR FMR1 Control24 UL49514
AmplideX PCR/CE FMR1 Reagents10049402
AmplideX mPCR FMR1 Kit2449442
AmplideX PCR/CE FMR1 ReporterN/A49576

T 1-877-777-1874; 512-681-5200 F 512-681-5202 E orders@asuragen.com

View Sales Contacts

References

  1. Referenced in over 30 peer reviewed publications and used in over 200 laboratories, the AmplideX® PCR/CE FMR1 Reagents* are globally recognized as best-in-class for assessment of CGG repeats in the FMR1 gene.
    • Key resources
    • Videos

AmplideX® PCR/CE FMR1 Kit

AmplideX FMR1AmplideX PCR/CE FMR1 Kit is an in vitro diagnostic (IVD) device for use in clinical laboratories for detection of the CGG repeats in the fragile X mental retardation (FMR1) gene. The device is intended to aid in the diagnosis of fragile X syndrome and fragile X associated disorders, e.g. tremor and ataxia syndrome (FX-TAS) and primary ovarian insufficiency (FXPOI), through determination of CGG repeat length up to 200 CGG and detection of alleles greater than 200 CGG. The kit provides a PCR-only approach based on Triplet Repeat Primed PCR (TP-PCR) design to reliably amplify and detect all alleles including Full Mutations.

Features & Benefits

AmplideX PCR/CE FMR1 Kit has created an easy-to-use, accessible, high performance method for laboratories to reliably analyze CGG repeats and detect interrupting AGG sequences in the FMR1 gene.

Reduced ComplexityEase-of-analysis of the FMR1 gene has been simplified through:

  • Implementation of proprietary PCR solution for amplifying GC-rich regions
  • Automation of result calling using AmplideX PCR/CE FMR1 Reporter 

Optimized WorkflowValuable operator hands-on time has been significantly reduced through:

  • Direct injection of PCR products (no PCR clean up) in to Capillary Electrophoresis platforms
  • Decreased need for Southern blot analysis (up to 50 fold)
  • End-to-end solution for FMR1 analysis including all necessary reagents and software

Quality PerformancePerforming FMR1 Analysis with Greater Sensitivity and Accuracy:

  • Detection of all allele expansions, including low abundance full mutation size mosaics with up to at least 1300 CGG repeats
  • Up to 875 fold more sensitive than Southern blot1
  • Resolution of female homozygous and heterozygous samples and indication of interrupting AGG sequences
  • Proven performance as indicated by more than 30 peer reviewed publications

Product Description

Analytical Characteristics of AmplideX PCR/CE FMR1 Kit:

  • Proven clinical accuracy compared to Southern Blot (Table 1)
  • Detects all alleles including low abundance full mutations (Figure 1)
  • Accurately sizes all alleles up to 200 CGG repeats (Figure 2)
  • Resolves female zygosity (Figure 3)
  • Detects presence of AGG interruptions (Figure 4)

Table 1: Diagnostic Sensitivity of 100%; Diagnostic Specificity of 98.4% and Overall Accuracy of 99%AmplideX has proven clinical accuracy compared to Southern Blot*These 2 samples presented premutation alleles by both methods and low intensity full mutation alleles detected only by the AmplideX PCR/CE FMR1 Kit

Figure 1: Amplification of Asuragen’s Methylation and Sensitivity Control which has a 5% full mutation in a background of 95% Normal

AmplideX Methylation and Sensitivity Control

Figure 2. Female Pre-mutation sample with accurate sizing of Normal (30 CGG) and Pre-mutation allele (56 CGG)

AmplideX Female premutation sample

Figure 3: The difference in the “stutter” peak patterns of homozygous and heterozygous female provides a clear resolution of zygosity

AmplideX resolves female zygosity

Figure 4. Female Full Mutation sample with AGG interruptions as indicated by sudden decrease in peak heights of the “stutter” peak profile

AmplideX Female Full Mutation sample

Ordering

Product NameNumber of ReactionsCatalog Number
AmplideX PCR/CE FMR1 Control*24 UL49513
AmplideX mPCR FMR1 Control*24 UL49514
AmplideX PCR/CE FMR1 Reagents*10049402
AmplideX PCR/CE FMR1 Kit10076008
AmplideX mPCR FMR1 Kit*2449442
AmplideX PCR/CE FMR1 Reporter*N/A49576

T 1-877-777-1874; 512-681-5200 F 1-512-681-5202 E orders@asuragen.com

View Sales Contacts

References

  1. Referenced in over 30 peer reviewed publications and used in over 200 laboratories, the AmplideX® PCR/CE FMR1 Reagents* are globally recognized as best-in-class for assessment of CGG repeats in the FMR1 gene.
    • Key resources
    • Videos
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RNA的二级结构是发卡型的单链结构,单链回折形成局部小双螺旋。也称茎环结构或球环结构。

tRNA的二级结构:单链内某些区域靠氢键配对形成局部双链,并折叠形成其二级结构-三叶草型结构
三级结构是在二级结构基础上进一步折叠形成,呈“倒L”型。
tRNA中是有氢键的。
tRNA不是一条直的单链,而是弯曲的,呈现一个三叶草的形状。在弯曲的部位,tRNA自己的碱基跟自己的碱基互补配对连起来,碱基对中存在氢键。
其他的RNA一般为单链不存在氢链,但双链的由于碱基互补配对存在氢键。
看有的文献上把tRNA和rRNA列入了ncRNA的范围,而有些则分开来讨论,到底哪种分类比较准确呢?

另外,最近测了些tRNA的二级结构,发现有部分不是三叶草结构,但是以前看文献上说tRNA都可以形成三叶草结构的,所以有些不解,望指点,非常感谢!

各种系统都可以使用,AlleleID7.0没搞的定

本软件只作为学习研究之用,研究完后马上删除,支持正版。。。




感谢ddd198599及其他司机的信息及启发

http://www.stemcell8.cn/thread-20673-1-1.html



AlleleID6破解版.rar(44952.85k)
一:结构特点:①含有稀有碱基较多,达核苷酸总量的5%-20%。②不同的tRNA尽管核苷酸组分和排列顺序各异,但其3’端都含有CCA序列,是所有tRNA接受氨基酸的特定位置。③所有的tRNA分子都折叠成紧密的三叶草二级结构和L型立体构象,结构较稳定,半衰期均在24小时以上。
  二:主要功能:①运输功能②在逆转录作用中作为合成互补链DNA链的引物。③在细菌细胞壁、叶绿素、脂多糖和氨酰磷脂酰甘油的合成中都与某些tRNA的参与有关。
FISH检测(9p24.3+cep9共2个探针)哪里能做检测啊?能做请回复一下,谢谢!
eve如何移动扫描探针 123
dem01234567892021-08-01
在恒星星图里完全没有什么圈啊,方向啊那些
没法移动,也没有办法看信号强度啊?
1,mRNA 水平的检测:siRNA 的作用机理在于其引起靶 mRNA 的降解,因此 mRNA 的降解水平是 siRNA 沉默效率的最直接指标。一般在 siRNA 转染后 24~72h 即可以检测到靶 mRNA 水平的降低。检测方法一般采用 Real-time PCR 定量检测。2,蛋白水平的检测:一般需要借助抗体(针对靶基因蛋白质的抗体或针对融合蛋白的抗体)或报告基因系统检测,检测手段一般有 Western-blot、免疫组化等。一般说来,检测时间受细胞内蛋白质表达量、蛋白质本身的半衰期等因素的影响,一般为 48~96h,甚至更长时间之后多点采样。3,通过siRNA引起的其他生物学变化来检测:某些siRNA作用于靶基因,会引起细胞的调亡和增殖变化,这个时候,可以通过关于调亡和增殖的变化来看RNAi的效果。希望能对您的问题有所帮助。
RNAi在哺乳动物细胞中通常用于阻断特定基因的表达从而研究基因的功能。成功的进行RNAi
的问题在于使siRNA导入细胞,
将sirna导入细胞内常见的方法是
将靶向特定基因的大约21碱基长短的双链 siRNAs small interfering RNAs。
或者是45 50 mer的发夹结构 RNA 转染到细胞。
此外通过质粒表达siRNAs 同样可以抑制特定基因的表达。
小弟最近买了sigma的tRNA干粉,技术说可以用水直接溶解,不知道需不需要DEPC处理,多少度保存?
tRNA的结构特点:转运RNA分子由一条长70~90个核苷酸并折叠成三叶草形的短链组成的。上图中有两种不同的分子,苯丙氨酸tRNA(4tna)和天冬氨酸tRNA(2tra)。tRNA链的两个末端在图上方指出的L形结构的末端互相接近。氨基酸在箭头示意的位置被连接。在这条链的中央形成了L形臂,如图下方所示,露出了形成反密码子的三个核苷酸。三叶草结构的其余两环被包裹成肘状,在那里它们提供整个分子的结构。四个常见RNA碱基---腺嘌呤,尿嘧啶,鸟嘌呤和胞嘧啶显然不能提供足够的空间以形成一个坚固的结构,因为这些碱基大部分被修饰过以延长它们的结构。有两个奇特的例子,看37号反密码子相邻的碱基,位于甲硫氨酸tRNA(1yfg)或苯丙氨酸tRNA(4tna和6tna)的起始部位。向左转|向右转
tRNA的功能:主要是携带氨基酸进入核糖体,在mRNA指导下合成蛋白质。即以mRNA为模板,将其中具有密码意义的核苷酸顺序翻译成蛋白质中的氨基酸顺序(见蛋白质的生物合成、核糖体)。tRNA与mRNA是通过反密码子与密码子相互作用而发生关系的。在肽链生成过程中,第一个进入核糖体与mRNA起始密码子结合的tRNA叫起始tRNA,其余tRNA参与肽链延伸,称为延伸tRNA,按照mRNA上密码的排列,携带特定氨基酸的tRNA依次进入核糖体。形成肽链后,tRNA即从核糖体释放出来。整个过程叫做tRNA循环(图3)。tRNA靠反密码子与mRNA识别,但并非一种反密码子只能识别一种密码子。例如反密码子CIG(I是次黄嘌呤核苷酸)能识别三种密码子。一般反密码子中的稀有核苷酸因配对不严格而能识别多种密码子,这种现象在生物学中称为“摆动性”tRNA是通过分子中3′端的CCA携带氨基酸的。氨基酸连接在腺苷酸的2′或3′OH基上,携带了氨基酸的tRNA叫氨酰tRNA,例如,携带甘氨酸的tRNA叫甘氨酰tRNA。氨基酸与tRNA的结合由氨酰tRNA合成酶催化,分二步进行:①氨基酸+ATP→氨酰-AMP+焦磷酸;②氨酰-AMP+tRNA→氨酰-tRNA+AMP。与一种氨基酸对应的至少有一种tRNA和一种氨酰-tRNA合成酶(见蛋白质生物合成)。tRNA还具有其他一些特异功能,例如,在没有核糖体或其他核酸分子参与下,携带氨基酸转移至专一的受体分子,以合成细胞膜或细胞壁组分;作为反转录酶引物参与DNA合成;作为某些酶的抑制剂等。有的氨酰-tRNA还能调节氨基酸的生物合成。在许多植物病毒RNA分子中发现有类似于tRNA的三叶草结构,有的也能接受氨基酸,其功能不详。向左转|向右转
【共享】siRNA对照解析123
白堤8544539862021-08-18
不会,siRNA识别靶序列是有高度特异性的,因为降解首先在相对于siRNA来说的中央位置发生,所以这些中央的碱基位点就显得极为重要,一旦发生错配就会严重抑制RNAi的效应。