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RunningProteinGels

10XRunningBuffer(0.25MTris,1.92Mglycine,1%SDS)121gTris577gglycine40gSDSddh20to4L(checkpHat1:10dilution(pH=~8.8)).5XSampleBuffer(0.3125MTrispH6.8,10%SDS,50%glycerol,0.005%bromophenolblue,25%2-mercaptoethanol)1.56ml2MTrispH6.81gSDS5mlglycerol0.2ml0.25%solutionofbromophenolblue2.5ml2-mercaptoethanolddH20to10ml.30:0.8Acrylamide:bis0.5MTrispH6.810%SDS10%APSTEMED3MTrispH8.8
5%StackingGel
15cmx17cm5cmx9cmSolution
4.2ml2.5mlAcrylamide:bis
5.8ml3.5ml0.5MTrispH6.8
15ml8.8mlddH20
120µl72µl10%SDS
120µl72µl10%APS
50µl30µlTEMED
10%ResolvingGel
15cmx17cm5cmx9cmSolution
15.9ml6.7mlAcrylamide:bis
12ml7.5ml3MTrispH8.8
18.9ml5.4mlddH20
480µl200µl10%SDS
480µl200µl10%APS
96µl40µlTEMED

StainingProtocols

ModifiedfromHoeferProteinElectrophoresisApplicationsGuide
StainingSolution(0.025%CoomassieBrilliantblueR250,40%methanol,7%aceticacid)0.5gCoomassieBrilliantblueR800mlmethanolStiruntildissolved.Thenadd:140mlaceticacidddH20to2LStoreatroomtemperatureforupto6months.DestainingSolutionI(40%methanol,7%aceticacid)400mlmethanol70mlaceticacidddH20to1LStoreatroomtemperatureadinfinitum.DestainingSolutionII(7%aceticacid,5%methanol)700mlaceticacid500mlmethanolddH20to10LStoreatroomtemperatureadinfinitum.
  1. PlacegelinStainingSolution.Shakeslowlyfor1hrtoovernight.
  2. ReplacetheStainingSolutionwithDestainingSolutionI.Shakeslowlyfor30minutes.
  3. RemoveDestainingSolutionIandreplacewithDestainingSolutionII.AdditionofKimwipestoonecornerofthestainingtraywillhelpremoveCoomassiebluefromthegelwithoutchangingthedestainingsolution.ReplacetissueswhentheyaresaturatedwithCoomassieblue.
  4. Tominimizecracking,add1%glyceroltothelastdestainbeforedryingthegel.

  1. Placegelinstainingsolutioninasmallboxwithalid.(Anemptypipettipboxworkswell.)
  2. Microwaveonhighfor1min,thenshake10-20min.
  3. ReplacestainingsolutionwithDestainI;AddsomeKimwipesorafolded-uppapertoweltohelpabsorbthestain.
  4. Microwaveonhighfor1minandshakeuntilthebandsemergeclearlyfromthebackground.
  5. PouroutDestainI,replacewithwater.Thegelwillcontinuetodestainalittlebit.
  6. Drydownthegelwhenyougetaroundtoit.

  1. Fix:50%methanol,10%aceticacid(100ml).
  2. Microwaveonhighfor1min,thenshake15min.
  3. Wash:dH20(100ml).
  4. Microwaveonhighfor1min,thenshake10min(oruntilthegelisrehydrated).
  5. Reduce:5µg/mlDTTindH20(100mls)(i.e.32.5µlof0.1MDTTinto100mls).
  6. Microwaveonhighfor1min,thenshake15min(oruntilthegelhascooled).
  7. Stain:0.1%AgNO3indH20(100ml)(Dilutea10%AgNO3stock).
  8. DONOTMICROWAVE.Shake15min.
  9. Develop:Makefreshdevelopersolutionforeachgel(200ml:40ml15%Na2CO3+160mldH20).
  10. WashquicklywithdH20--2X.Shakewhilewashing.
  11. Washquicklywithdeveloper--2X50mls.
  12. Add100µlof37%formaldehydetotheremaining100mlsofdeveloper.
  13. Pourdeveloperongelandshakeuntilbandsareseen.
  14. STOPbyadding5mlsof2.3Mcitricacid(shouldbebubbling).
  15. ShakeinSTOPfor10min,thenwashoutwithdH20severaltimes(otherwisethebackgroundturnsyellow).
  16. Soakin5%glycerolfor15minorlongerbeforedryinggel.
Ifpreparingasampleformassspectrometry,youmaywishtousetheprotocolfoundhere.

Westerns

  1. Optional:soakthegelinsemidrytransferbuffer(48mMTris,39mMglycine,0.037%SDS,20%methanol)10-20’.
  2. Cutthemembrane(Immobilon-P/PVDF)and6piecesofblottingpaper(e.g.SchleicherandSchuellGB002)tothesamesizeasthegel(~8.5x5.7cm).Wetthemembranefor15secondsin100%methanol,thensoakfor2’inwater,thenequilibratethemembranefor5minutesintransferbuffer.
  3. Assemblethetransferstack:
    1. Threepiecesofblotpapersoakedintransferbuffer
    2. Gel
    3. Pre-soakedmembrane
    4. Threepiecesofblotpapersoakedintransferbuffer
  4. Placestackupsidedown(gelsideup)onblotter.
  5. Blotat0.8mA/cm2(~38mApergel)for1-2hrs.
  6. Placethemembraneonapieceofblotpaperanddryfor2hrs(orlonger)atroomtemporsoakthemembranein100%methanolfor10sec.anddry15min.
  1. Wetmembrane5sec.in100%methanol,thenincubatebrieflyinTBST(25mMTris,140mMNaCl,3mMKCl,0.05%Tween-20,pH8.0).
  2. StainwithIndiaInk(Pelikan,FountIndiaBlack)0.1%inTBSTwith0.02%azide(saveandstoreat4°C).
  3. Wash2timeswithTBST.
  4. Blockfor1hratRTorO/Nat4°Cwith5%nonfatdrymilkinTBSTand0.02%azide(saveandstoreat4°C).
  5. WashbrieflywithTBST.
  6. IncubatewithfirstantibodyinTBST,2%milk,0.02%azide(saveandstoreat4°C)for1-2hratRT(orO/Nat4°C).
  7. QuickwashwithTBST,thenwash3x10’withTBST.
  8. Incubatewithsecondaryantibody(1:5000dilution)inTBST,2%milk(noazide!)for20-60’.
  9. QuickwashwithTBST,thenwash3x10’withTBST.
  10. PrepareECLreagents:mixthetworeagents1:1(~1mlperblot)andPipette~1mlonapieceofSaranwraptapedtothebench.
  11. Dragtheblotalongtheedgeofthetray,drainexcessTBST,thenplacetheblotwithproteinsidedownontheECLsolution.
  12. Incubatefor1’thendrainexcessreagentandtransfertheblottoaplasticreportcover.
  13. Exposeimmediately(fewseconds—1hr).

Stripping

  1. Afterdetectionwashthemembrane2x10’inTBST.
  2. Incubate30’at50degCinaclosedcontainerinstrippingbuffer(65mMTris-HClpH6.7,100mMbeta-mercaptoethanol,2%SDS).Ifstrippingisincompleteincreasetemperatureto60or70degC.
  3. Wash3x10’inalargevolumeofTBSTatRT.
  4. Themembraneisnowreadytobeblocked.

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