lowfrequencytable
CodonusageforC.eleganslowlybiased(lowlyexpressed,byinference)genes.(Stenico,M.,Lloyd,A.T.,andSharp,P.M.(1994).NucleicAcidsResearch22:2437-2246AmAcid Codon Number /1000 Fraction Gly GGG 32 4.34 0.09 Gly GGA 207 28.05 0.57 Gly GGT 96 13.01 0.26 Gly GGC 28 3.79 0.08 Glu GAG 140 18.97 0.26 Glu GAA 393 53.26 0.74 Asp GAT 341 46.21 0.76 Asp GAC 106 14.37 0.24 Val GTG 72 9.76 0.16 Val GTA 101 13.69 0.23 Val GTT 201 27.24 0.46 Val GTC 67 9.08 0.15 Ala GCG 58 7.86 0.15 Ala GCA 179 24.26 0.46 Ala GCT 106 14.37 0.27 Ala GCC 48 6.5 0.12 Arg AGG 31 4.2 0.07 Arg AGA 132 17.89 0.29 Ser AGT 111 15.04 0.2 Ser AGC 46 6.23 0.08 Lys AAG 127 17.21 0.3 Lys AAA 297 40.25 0.7 Asn AAT 258 34.96 0.73 Asn AAC 97 13.15 0.27 Met ATG 237 32.12 1 Ile ATA 79 10.71 0.18 Ile ATT 265 35.91 0.6 Ile ATC 99 13.42 0.22 Thr ACG 86 11.65 0.21 Thr ACA 171 23.17 0.42 Thr ACT 111 15.04 0.28 Thr ACC 35 4.74 0.09 Trp TGG 86 11.65 1 End TGA 6 0.81 0.4 Cys TGT 104 14.09 0.64 Cys TGC 58 7.86 0.36 End TAG 2 0.27 0.13 End TAA 7 0.95 0.47 Tyr TAT 157 21.28 0.69 Tyr TAC 70 9.49 0.31 Leu TTG 139 18.84 0.22 Leu TTA 111 15.04 0.17 Phe TTT 172 23.31 0.53 Phe TTC 153 20.73 0.47 Ser TCG 61 8.27 0.11 Ser TCA 178 24.12 0.31 Ser TCT 118 15.99 0.21 Ser TCC 52 7.05 0.09 Arg CGG 39 5.29 0.09 Arg CGA 169 22.9 0.37 Arg CGT 77 10.44 0.17 Arg CGC 9 1.22 0.02 Gln CAG 87 11.79 0.25 Gln CAA 256 34.69 0.75 His CAT 121 16.4 0.65 His CAC 65 8.81 0.35 Leu CTG 85 11.52 0.13 Leu CTA 73 9.89 0.11 Leu CTT 156 21.14 0.24 Leu CTC 77 10.44 0.12 Pro CCG 58 7.86 0.17 Pro CCA 165 22.36 0.49 Pro CCT 81 10.98 0.24 Pro CCC 30 4.07 0.09 highfrequencytable
CodonusageforC.eleganshighlybiased(highlyexpressed,byinference)genes.(Stenico,M.,Lloyd,A.T.,andSharp,P.M.(1994).NucleicAcidsResearch22:2437-2246AmAcid Codon Number /1000 Fraction Gly GGG 3 0.41 0.01 Gly GGA 448 61.54 0.85 Gly GGT 59 8.1 0.11 Gly GGC 17 2.34 0.03 Glu GAG 417 57.28 0.69 Glu GAA 183 25.14 0.31 Asp GAT 194 26.65 0.41 Asp GAC 278 38.19 0.59 Val GTG 30 4.12 0.07 Val GTA 13 1.79 0.03 Val GTT 137 18.82 0.3 Val GTC 272 37.36 0.6 Ala GCG 5 0.69 0.01 Ala GCA 34 4.67 0.05 Ala GCT 260 35.71 0.38 Ala GCC 382 52.47 0.56 Arg AGG 4 0.55 0.01 Arg AGA 61 8.38 0.18 Ser AGT 9 1.24 0.02 Ser AGC 24 3.3 0.06 Lys AAG 600 82.42 0.95 Lys AAA 31 4.26 0.05 Asn AAT 39 5.36 0.14 Asn AAC 244 33.52 0.86 Met ATG 167 22.94 1 Ile ATA 2 0.27 0 Ile ATT 91 12.5 0.22 Ile ATC 324 44.51 0.78 Thr ACG 5 0.69 0.01 Thr ACA 9 1.24 0.02 Thr ACT 93 12.77 0.25 Thr ACC 263 36.13 0.71 Trp TGG 52 7.14 1 End TGA 1 0.14 0.06 Cys TGT 14 1.92 0.18 Cys TGC 64 8.79 0.82 End TAG 1 0.14 0.06 End TAA 14 1.92 0.88 Tyr TAT 22 3.02 0.11 Tyr TAC 173 23.76 0.89 Leu TTG 82 11.26 0.14 Leu TTA 3 0.41 0.01 Phe TTT 8 1.1 0.03 Phe TTC 223 30.63 0.97 Ser TCG 29 3.98 0.07 Ser TCA 28 3.85 0.07 Ser TCT 111 15.25 0.27 Ser TCC 212 29.12 0.51 Arg CGG 1 0.14 0 Arg CGA 2 0.27 0.01 Arg CGT 156 21.43 0.46 Arg CGC 114 15.66 0.34 Gln CAG 113 15.52 0.35 Gln CAA 206 28.3 0.65 His CAT 38 5.22 0.26 His CAC 108 14.84 0.74 Leu CTG 10 1.37 0.02 Leu CTA 0 0 0 Leu CTT 207 28.43 0.36 Leu CTC 279 38.32 0.48 Pro CCG 4 0.55 0.01 Pro CCA 290 39.84 0.93 Pro CCT 10 1.37 0.03 Pro CCC 7 0.96 0.02
